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Center for Microscopy and Image Analysis

CLSM - Abberior INFINITY STED upright (Irchel)

Abberior INFINITY STED

The Abberior INFINITY STED (STimulated Emission Depletion) microscope, a state-of-the-art super-resolution and confocal microscopy tool, is designed around an upright BX63F microscope body. It is equipped with four LED lines for widefield fluorescence, four laser lines, and one additional depletion laser lines. This advanced setup utilizes the STED principle to facilitate imaging that surpasses the diffraction limit. Under optimal conditions, the instrument can achieve a resolution of 42 nm laterally (xy) and 75 nm axially (z). Enhancements include a special MATRIX array detector, which improves the signal-to-background ratio, resolution, and dynamic range. With its adaptive optics for aberration correction, the microscope preserves resolution and brightness deep within thicker samples. Furthermore, Adaptive Illumination technology allows for the highest resolution and live-cell super-resolution imaging at ultra-low light levels, offering versatile and powerful imaging capabilities.

Lateral resolution (XY): 42 nm, axial resolution (Z): 75nm (typical experimental FWHM values with UPLAXPO60XO Oil immersion objective lens, NA 1.42, subresolution Crimson beads of 40 nm diameter and excitation at 640nm, 775 nm STED 100% of 3W)

Responsible Person

responsible person

Location

University Zurich, Irchel Campus, Room Y11J24

Request a training

Follow thislink to apply for an introduction to the microscope.

 

Technical Specification

Microscope

  • upright confocal microscope (Evident BX63F)
  • 3 freely selectable emission detection windows
  • V380FM-U Luigs & Neumann motorized xy stage inVitro XY bridge 500 with 2.5 mm motor resolution and <1 µm reproducibility (Luigs & Neumann)
  • 3D capability (confocal, STED)

Light Sources and Lasers

  • Widefield LED Illumination (405nm/470nm/565nm/625nm)
    • Quad Band filter cube (DAPI/ STAR488/ Cy3/ STAR635P)
  • Laser module 405 nm, continuous wave (cw)
    • continious wave 50 mW
  • Fluorescence Excitation Laser Module 485 nm (pulsed)
    • 1 mW pulsed at 25 ns
  • Fluorescence Excitation Laser Module 561 nm (pulsed)
    • 200 µW pulsed at 25 ns
  • Fluorescence Excitation Laser Module 640 nm (pulsed)
    • 1 mW pulsed at 25 ns
  • STED Laser Module 775nm (high-power variant)
    • 2750 mW pulsed at 25 ns

Scanner

  • 3x Channel Spectral APD Detectors
    • 3 single-photon-counting APD modules; extremely low dark counts to render the finest details
    • Detection bands fully tunable between 400 - 800nm
    • APD modules enable highly accurate time gated detection
    • Single-photon-counting APD with a superior sensitivity (up to 65 % photon detection efficiency) and low dark count (<250Hz)
  • 1x MATRIX detector 
    • Contains one MATRIX array detector with more than 20 avalanche photodiodes in single photon counting mode.
    • Enables dramatic reduction of background levels on a the basis of physics - no estimation procedure sch as deconvolution. MATRIX detects the background for each pixel in the STED image and allows the operator to subtract it. The final image is greatly suited for further processing and analysis, e.g. deconvolution, particle counting, etc.

Available Optics

Name Magnification NA Immersion WD (mm) Modality
Olympus UPLFLN4X 4x 0.13 Air 17.0 CLSM
Olympus UPLXAPO20X 20x 0.8 airy 0.6 CLSM
Evident UPLSAPO60XW 63x 1.2 water 0.28

STED

Evident UPLXAPO60XO
 
63x 1.42 oil 0.15 STED

Evident

LUMPLFLN60XW

60x 1 water dipping 2 CLSM

 

 

Additional Features

RAYSHAPE

RAYPSHAPE (adaptive optics) system uses a deformable mirror to correct aberrations in microscopy imaging, particularly in inhomogeneous specimens like tissue. This technology dynamically adjusts the mirror's surface to realign distorted light rays, ensuring sharp and high-resolution images throughout different depths of the sample. It outperforms traditional correction methods by maintaining focus and image quality autonomously and continuously as the microscope examines various depths.

MATRIX detector

The MATRIX detector by Abberior Instruments enhances microscopy by using numerous photodiodes on a single chip, viewing samples from various angles to improve resolution and reduce background noise. It features multiple avalanche photo diodes (APDs) with high quantum efficiency, arranged hexagonally. This configuration significantly reduces background levels in STED images, enhancing clarity and detail. The multiple detection points enable precise foreground-background distinction without relying on artefact-prone mathematical algorithms, improving optical sectioning and data analysis.

TIMEBOW

TIMEBOW  is a sophisticated tool designed for fluorescence lifetime imaging, applicable in both confocal and STED microscopy. It excels in differentiating fluorescence lifetimes due to varying types of autofluorescent molecules and their nano-environments. The system optimizes image quality by integrating MATRIX detection to remove background, allowing for selective exclusion of STED-affected emission and improvement in resolution. TIMEBOW also enables the distinction of dyes with similar excitation properties by using lifetime information, which is particularly useful for complex samples where multiple fluorophores are present. This capability allows for detailed, multi-color imaging with enhanced resolution, using a single STED laser.

FLEXPOSURE

Adaptive illumination dramatically reduces the light dose on the sample by up to two orders of magnitude through decreasing or shutting down laser irradiation, whenever it is clear that there is no structure present at the current pixel. This substantially reduces photobleaching. Often, FLEXPOSURE makes all the difference between a crisp image and no superresolution image at all.

 

Labeling for STED microscopy

Labelling Protocols A good first step is to start with a protocol that's already known to work well for confocal microscopy. It's likely that it will be just as effective for STED microscopy, especially if you swap out the dyes for ones that are compatible with STED.
Coverslips It's advised to use glass coverslips that are precisely 170 um thick (#1.5 or #1.5H). This thickness is optimal as most objective lenses on Abberior systems are calibrated for it. Please avoid using plastic coverslips or chambers with a plastic coverslip base, as plastic can lead to aberrations and polarization alterations in the STED beams, adversely affecting the quality of the imaging.
Embedding Media
recommended for 2D STED microscopy
recommended for 3D STED microscopy
*Please do not use Vectashield, Vectashield HardSET or any embedding medium that contains p-phenylenediamine as an antifade reagent. When using ProLong Glass, please note that some orange dyes may become red-shifted, causing cross-talk with the red channel. Please do NOT include DAPI, Hoechst, Propidium Iodide or Ethidium Bromide in your embedding medium, as these dyes may be excited by the STED laser, leading to high background and blurred images.
Dyes for STED Microscopy

Red dyes (640 nm excitation line)

  • STAR RED
  • STAR 635P
  • ATTO 647N
  • SiR
  • JF 646
  • LIVE 610
  • mGarnet
775 Depletion line

Orange dyes (561 nm excitation line)

  • STAR Orange
  • STAR 580
  • ALEXA Fluor 594
  • ATTO 594
  • ALEXA Fluor 568
  • ATTO 590
  • JF 594
  • LIVE 560
  • LIVE 580
  • LIVE 590
  • mNeptune2
775 Depletion line

Green dyes (488 nm excitation line)

  • STAR Green
  • STAR 488
  • Oregon Green
  • ALEXA Fluor 488
  • ATTO 488
  • LIVE 510
  • mNeonGreen
  • emGFP

595 Depletion line

*not available on Abberior STED Infinity Line but available on Leica SP8 3X STED

*For STED imaging, please use organic dyes whenever possible. Organic dyes are superior to fluorescent proteins (FPs), especially with respect to brightness and photostability. As an alternative to FPs in live-cell experiments, cell-permeable organic dyes (e.g. SiR or ATTO590) may be used in conjunction with self-labelling protein tags e.g. SNAP- and/or Halo-tag.

 

Multi colour recommendation
4 Colour STED (775 nm depletion)
  • STAR RED, STAR ORANGE, STAR 580, STAR 460L
  • STAR RED, STAR ORANGE, CF594, STAR 460L*

*CF594 and STAR Orange need to be separated by TIMEBOW lifetime imaging

3 Colour STED (775 nm depletion)
  • STAR RED, STAR ORANGE, STAR 460L
  • STAR RED, STAR ORANGE, CF594*

*CF594 and STAR Orange need to be separated by TIMEBOW lifetime imaging

2 Colour STED (775 nm depletion)
STAR RED, STAR ORANGE
1 Colour STED (775 nm depletion)
STAR RED

 

 

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